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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1783ChIP-seq
  • 1330total RNA-seq
  • 471ATAC-seq
  • 228single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 30Hi-C
  • 28WGBS
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 8snATAC-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 228Transcription
Target of assay
  • 3control
Date released
  • 106August, 2021
  • 49April, 2018
  • 48July, 2018
  • 6February, 2021
  • 3August, 2018
  • 3December, 2019
  • 3July, 2019
  • 3June, 2018
  • 3May, 2023
  • 1February, 2023
  • 1May, 2022
  • 1November, 2018
  • 1September, 2018
Available data
  • 211tsv
  • 106bam
  • 106bigWig
  • 100fastq
  • 13txt
  • 8csv
Organism
  • 228Homo sapiens
Biosample type
  • 124tissue
  • 102primary cell
  • 2in vitro differentiated cells
Organ
  • 93heart
  • 80pancreas
  • 70epithelium
  • 17kidney
  • 6blood vessel
  • 6vasculature
  • 4connective tissue
  • 3brain
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 228AMP
  • 85HPAP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 106GRCh38
  • 106hg19
Lab
  • 217AMP-T2D consortium
  • 11Katalin Susztak, Upenn
Audit category:
  • 9inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

228 results

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Clear Filters
single cell RNA-seq
tissue
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
kidney17
primary cell
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
pancreatic ductal cell10
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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