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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1125
total RNA-seq
1068
ChIP-seq
447
ATAC-seq
354
single cell RNA-seq
209
DNase-seq
83
snATAC-seq
74
WGBS
29
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
354
Transcription
Target of assay
3
control
Date released
98
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
209
tsv
134
fastq
106
bam
106
bigWig
52
zippedFastqFolder
txt
8
csv
Organism
354
Homo sapiens
Biosample type
187
primary cell
167
tissue
in vitro differentiated cells
Organ
93
heart
80
pancreas
70
epithelium
51
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
213
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
210
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
biosample_type!
cell line
in vitro differentiated cells
files.file_type!
txt
month_released!
May, 2021
BIOSAMPLE
ASSAY
354 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
51
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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