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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1331
total RNA-seq
858
ChIP-seq
389
ATAC-seq
303
single cell RNA-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
50
pCHi-C
29
Hi-C
17
RRBS
17
small RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
DNase-seq
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
303
Transcription
Target of assay
3
control
Date released
98
August, 2021
49
April, 2018
48
July, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
204
tsv
134
fastq
106
bam
106
bigWig
52
zippedFastqFolder
3
csv
Organism
303
Homo sapiens
Biosample type
187
primary cell
116
tissue
in vitro differentiated cells
Organ
93
heart
80
pancreas
70
epithelium
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
209
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
209
AMP-T2D consortium
85
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed narrowPeak
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
kidney
BIOSAMPLE
ASSAY
303 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
lung
9
+ See 13 more…
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