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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
924
total RNA-seq
740
ChIP-seq
360
ATAC-seq
226
single cell RNA-seq
186
DNase-seq
87
RNA microarray
57
snATAC-seq
53
WGBS
48
pCHi-C
22
Hi-C
15
RRBS
15
small RNA-seq
10
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
226
Transcription
Target of assay
3
control
Date released
100
August, 2021
47
September, 2023
34
May, 2022
18
September, 2020
9
April, 2020
5
April, 2018
5
February, 2021
3
July, 2019
3
May, 2023
1
December, 2019
1
February, 2023
Available data
203
tsv
fastq
106
bam
106
bigWig
52
zippedFastqFolder
13
txt
7
csv
Organism
226
Homo sapiens
Biosample type
167
tissue
59
primary cell
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
vasculature
5
pancreas
4
epithelium
3
brain
2
artery
1
connective tissue
liver
1
musculature of body
Project
119
AMP
51
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
108
AMP-T2D consortium
51
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
5
audit script error
biosample_type!
in vitro differentiated cells
files.file_type!
fastq
organ_slims!
liver
vasculature
BIOSAMPLE
ASSAY
226 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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primary cell
Langerhans cell
51
pancreatic acinar cell
3
cerebellar granule cell
2
Purkinje cell
1
pancreatic ductal cell
1
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