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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1444
ChIP-seq
1286
total RNA-seq
481
ATAC-seq
327
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
52
pCHi-C
30
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
327
Transcription
Target of assay
3
control
Date released
106
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
209
tsv
112
fastq
106
bam
106
bigWig
33
zippedFastqFolder
13
txt
8
csv
Organism
327
Homo sapiens
Biosample type
180
tissue
147
primary cell
in vitro differentiated cells
Organ
93
heart
80
pancreas
70
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
226
AMP
47
KPMP
45
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
215
AMP-T2D consortium
47
KPMP
45
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
5
audit script error
biosample_type!
in vitro differentiated cells
month_released!
August, 2017
September, 2020
BIOSAMPLE
ASSAY
327 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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primary cell
Langerhans cell
45
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
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