Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1592ChIP-seq
  • 1280total RNA-seq
  • 331ATAC-seq
  • 182single cell RNA-seq
  • 181DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 28snATAC-seq
  • 24Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 182Transcription
Date released
  • 106August, 2021
  • 47September, 2023
  • 9April, 2020
  • 6April, 2018
  • 6February, 2021
  • 3December, 2019
  • 3May, 2023
  • 1February, 2023
  • 1May, 2022
Available data
  • 111tsv
  • 13txt
  • 6bam
  • 6bigWig
  • 6csv
  • 6fastq
Organism
  • 182Homo sapiens
Biosample type
  • primary cell
  • 180tissue
  • 2in vitro differentiated cells
Organ
  • 93heart
  • 64kidney
  • 9lung
  • 6blood vessel
  • 6pancreas
  • 6vasculature
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 126AMP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 6GRCh38
  • 6hg19
Lab
  • 115AMP-T2D consortium
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
Audit category:
  • 7audit script error
  • 2inconsistent ontology term
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

182 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego