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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
single cell RNA-seq
165
ChIP-seq
157
ATAC-seq
98
total RNA-seq
86
RNA microarray
50
snATAC-seq
39
pCHi-C
21
Hi-C
15
RRBS
10
WGBS
5
GRO-seq
3
snDrop-seq
1
DNAme array
1
DNase-seq
1
MPRA
Assay category
196
Transcription
Date released
98
August, 2021
40
September, 2020
34
May, 2022
18
February, 2021
3
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
141
tsv
68
fastq
52
zippedFastqFolder
bam
36
bigWig
8
csv
5
txt
Organism
196
Homo sapiens
Biosample type
107
tissue
87
primary cell
2
in vitro differentiated cells
Organ
93
heart
6
blood vessel
6
kidney
6
vasculature
2
artery
1
liver
1
musculature of body
Project
111
AMP
85
HPAP
Lab
111
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
organ_slims!
epithelium
BIOSAMPLE
ASSAY
196 results
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single cell RNA-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
6
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primary cell
Langerhans cell
85
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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