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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 85snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 263Transcription
Date released
  • 106August, 2021
  • 47September, 2023
  • 40September, 2020
  • 34May, 2022
  • 18February, 2021
  • 9April, 2020
  • 3December, 2019
  • 3May, 2023
  • 1February, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 211tsv
  • 134fastq
  • bam
  • 106bigWig
  • 52zippedFastqFolder
  • 13txt
  • 8csv
Organism
  • 263Homo sapiens
Biosample type
  • 174tissue
  • 87primary cell
  • 2in vitro differentiated cells
Organ
  • 93heart
  • 64kidney
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 122AMP
  • 85HPAP
  • 47KPMP
  • 9LungMap
Lab
  • 111AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
Audit category:
  • 7audit script error
  • 2inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

263 results

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Clear Filters
single cell RNA-seq
tissue
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
lung9
aorta4
aortic valve4
pulmonary valve4
tricuspid valve4
mitral valve3
cardiac atrium2
cardiac ventricle2
interventricular septum2
pulmonary artery2
heart1
liver1
skeletal muscle tissue1
primary cell
Langerhans cell85
pancreatic cell2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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