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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 524ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 369Transcription
Target of assay
  • 3control
Date released
  • 106August, 2021
  • 49April, 2018
  • 48July, 2018
  • 47September, 2023
  • 40September, 2020
  • 34May, 2022
  • 18February, 2021
  • 9April, 2020
  • 3August, 2018
  • 3December, 2019
  • 3July, 2019
  • 3June, 2018
  • 3May, 2023
  • 1February, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 211tsv
  • 134fastq
  • 106bam
  • 106bigWig
  • 52zippedFastqFolder
  • 13txt
  • 8csv
Organism
  • 369Homo sapiens
Biosample type
  • 187primary cell
  • 180tissue
  • 2in vitro differentiated cells
Organ
  • 93heart
  • 80pancreas
  • 70epithelium
  • 64kidney
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 4connective tissue
  • 3brain
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 228AMP
  • 85HPAP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 106GRCh38
  • 106hg19
Lab
  • 217AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
Audit category:
  • 9inconsistent ontology term
  • 7audit script error
files.file_type!
  • bed bedgraph
BIOSAMPLE
ASSAY

369 results

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Clear Filters
single cell RNA-seq
primary cell
Langerhans cell85
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
tissue
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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