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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ChIP-seq
374
ATAC-seq
245
single cell RNA-seq
245
total RNA-seq
57
snATAC-seq
55
pCHi-C
52
WGBS
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
245
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
February, 2021
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
158
tsv
74
fastq
58
bam
bigWig
52
zippedFastqFolder
8
txt
2
csv
Organism
245
Homo sapiens
Biosample type
168
tissue
75
primary cell
2
in vitro differentiated cells
Organ
93
heart
59
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
musculature of body
Project
116
AMP
73
HPAP
47
KPMP
9
LungMap
Lab
105
AMP-T2D consortium
73
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
2
audit script error
2
inconsistent ontology term
files.file_type!
bigWig
month_released!
February, 2021
July, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
245 results
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single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
primary cell
Langerhans cell
73
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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