Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1363
total RNA-seq
435
ATAC-seq
191
single cell RNA-seq
182
DNase-seq
87
RNA microarray
54
pCHi-C
36
snATAC-seq
23
Hi-C
20
WGBS
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
191
Transcription
Target of assay
3
control
Date released
49
April, 2018
48
July, 2018
47
September, 2023
14
August, 2021
9
April, 2020
6
February, 2021
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
119
tsv
106
bam
106
bigWig
100
fastq
13
txt
8
csv
Organism
191
Homo sapiens
Biosample type
102
primary cell
87
tissue
2
in vitro differentiated cells
Organ
heart
80
pancreas
70
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
135
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
124
AMP-T2D consortium
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
7
audit script error
files.file_type!
hdf5
lab.title!
Klaus Kaestner, Upenn
organ_slims!
heart
BIOSAMPLE
ASSAY
191 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 13 more…
tissue
kidney
64
lung
9
islet of Langerhans
6
aorta
4
pulmonary artery
2
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download