Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 517ATAC-seq
  • 212DNase-seq
  • 212total RNA-seq
  • 158single cell RNA-seq
  • 85RNA microarray
  • 84snATAC-seq
  • 69WGBS
  • 34Hi-C
  • 26pCHi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 158Transcription
Date released
  • 47September, 2023
  • 40September, 2020
  • 34May, 2022
  • 13February, 2021
  • 9April, 2020
  • 8August, 2021
  • 3May, 2023
  • 1December, 2019
  • 1February, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • tsv
  • 134fastq
  • 106bam
  • 106bigWig
  • 52zippedFastqFolder
  • 13txt
  • 8csv
Organism
  • 158Homo sapiens
Biosample type
  • 87primary cell
  • 71tissue
Organ
  • 59kidney
  • 9lung
  • 1heart
  • 1liver
  • 1musculature of body
Project
  • 85HPAP
  • 47KPMP
  • 17AMP
  • 9LungMap
Lab
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
  • 6AMP-T2D consortium
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

158 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
primary cell
Langerhans cell85
pancreatic cell2
tissue
kidney59
lung9
heart1
liver1
skeletal muscle tissue1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego