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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1468total RNA-seq
  • 528ATAC-seq
  • 356single cell RNA-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3RNA microarray
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 356Transcription
Target of assay
  • 3control
Date released
  • 98August, 2021
  • 49April, 2018
  • 48July, 2018
  • 47September, 2023
  • 40September, 2020
  • 34May, 2022
  • 13February, 2021
  • 9April, 2020
  • 3August, 2018
  • 3December, 2019
  • 3July, 2019
  • 3June, 2018
  • 3May, 2023
  • 1February, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 211tsv
  • 134fastq
  • 106bam
  • 106bigWig
  • 52zippedFastqFolder
  • txt
  • 8csv
Organism
  • 356Homo sapiens
Biosample type
  • 187primary cell
  • 167tissue
  • 2in vitro differentiated cells
Organ
  • 93heart
  • 80pancreas
  • 70epithelium
  • 51kidney
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 4connective tissue
  • 3brain
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 215AMP
  • 85HPAP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 106GRCh38
  • 106hg19
Lab
  • 212AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 9Xin Sun, UCSD
  • 3Katalin Susztak, Upenn
Audit category:
  • 9inconsistent ontology term
  • 2audit script error
files.file_type!
  • txt
BIOSAMPLE
ASSAY

356 results

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Clear Filters
single cell RNA-seq
primary cell
Langerhans cell85
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
tissue
kidney51
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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