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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1289
ChIP-seq
1261
total RNA-seq
192
DNase-seq
102
ATAC-seq
84
RNA microarray
49
single cell RNA-seq
18
small RNA-seq
17
WGBS
5
GRO-seq
4
FAIRE-seq
1
MPRA
1
snATAC-seq
Assay category
49
Transcription
Target of assay
3
control
Date released
16
April, 2018
15
July, 2018
8
August, 2021
5
February, 2021
3
July, 2019
2
June, 2018
Available data
141
tsv
68
fastq
52
zippedFastqFolder
36
bam
36
bigWig
13
txt
8
csv
Organism
49
Homo sapiens
Biosample type
30
primary cell
19
tissue
Organ
80
pancreas
epithelium
13
kidney
4
connective tissue
3
brain
Project
49
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
41
AMP-T2D consortium
8
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
5
audit script error
files.file_type!
hdf5
organ_slims!
epithelium
BIOSAMPLE
ASSAY
49 results
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single cell RNA-seq
primary cell
pancreatic cell
7
mesenchymal cell
6
pancreatic stellate cell
4
cerebellar granule cell
2
co-expressing pancreatic endocrine cell
2
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tissue
kidney
13
islet of Langerhans
6
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