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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
270
ChIP-seq
226
ATAC-seq
144
single cell RNA-seq
89
DNase-seq
51
WGBS
17
snATAC-seq
10
Hi-C
10
MeRIP-seq
6
RRBS
3
FAIRE-seq
3
pCHi-C
3
small RNA-seq
3
snDrop-seq
2
Capture-C
2
RNA microarray
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
144
Transcription
Date released
47
September, 2023
39
April, 2018
37
July, 2018
8
August, 2021
5
February, 2021
3
August, 2018
3
May, 2023
1
December, 2019
1
June, 2018
Available data
85
tsv
80
bam
80
bigWig
75
fastq
13
txt
5
csv
Organism
144
Homo sapiens
Biosample type
74
primary cell
70
tissue
Organ
93
heart
80
pancreas
70
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
97
AMP
47
KPMP
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
86
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
Audit category:
5
audit script error
5
inconsistent ontology term
lab.title!
Stephen Parker, UMich
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
144 results
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single cell RNA-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
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tissue
kidney
64
islet of Langerhans
6
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