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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1690ChIP-seq
  • 1337total RNA-seq
  • 426ATAC-seq
  • 280single cell RNA-seq
  • 185DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 280Transcription
Target of assay
  • 3control
Date released
  • 106August, 2021
  • 47September, 2023
  • 40September, 2020
  • 33May, 2022
  • 17February, 2021
  • 10April, 2018
  • 9April, 2020
  • 6July, 2018
  • 3December, 2019
  • 3July, 2019
  • 3May, 2023
  • 2June, 2018
  • 1November, 2018
Available data
  • 126tsv
  • 52zippedFastqFolder
  • 51fastq
  • 21bam
  • 21bigWig
  • 13txt
  • 6csv
Organism
  • 280Homo sapiens
Biosample type
  • 171tissue
  • 107primary cell
  • 2in vitro differentiated cells
Organ
  • 92heart
  • 64kidney
  • 10epithelium
  • 10pancreas
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 3brain
  • 2artery
Project
  • 139AMP
  • 85HPAP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 21GRCh38
  • 21hg19
Lab
  • 128AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
Audit category:
  • 7audit script error
  • 5inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

280 results

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Clear Filters
single cell RNA-seq
tissue
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
primary cell
Langerhans cell85
pancreatic acinar cell4
mesenchymal cell3
pancreatic cell3
cerebellar granule cell2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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