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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 78snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 363Transcription
Date released
  • 106August, 2021
  • 49April, 2018
  • 47July, 2018
  • 47September, 2023
  • 40September, 2020
  • 34May, 2022
  • 18February, 2021
  • 9April, 2020
  • 3August, 2018
  • 3June, 2018
  • 3May, 2023
  • 1December, 2019
  • 1February, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 205tsv
  • 133fastq
  • 102bam
  • 102bigWig
  • 52zippedFastqFolder
  • 13txt
  • 8csv
Organism
  • 363Homo sapiens
Biosample type
  • 183primary cell
  • 180tissue
Organ
  • 93heart
  • 80pancreas
  • 70epithelium
  • 64kidney
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 4connective tissue
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 222AMP
  • 85HPAP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 102GRCh38
  • 102hg19
Lab
  • 211AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
Audit category:
  • 7inconsistent ontology term
  • 5audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

363 results

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Clear Filters
single cell RNA-seq
primary cell
Langerhans cell85
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
pancreatic ductal cell10
pancreatic polypeptide-secreting cell9
pancreatic cell8
mesenchymal cell6
pancreatic stellate cell4
co-expressing pancreatic endocrine cell2
endothelial cell2
enteroendocrine cell2
mast cell2
pancreatic epsilon cell2
unclassified exocrine cell2
unclassified pancreatic endocrine cell2
tissue
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
lung9
islet of Langerhans6
aorta4
aortic valve4
pulmonary valve4
tricuspid valve4
mitral valve3
cardiac atrium2
cardiac ventricle2
interventricular septum2
pulmonary artery2
heart1
liver1
skeletal muscle tissue1
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