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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1476
total RNA-seq
1297
ChIP-seq
441
ATAC-seq
363
single cell RNA-seq
190
DNase-seq
87
RNA microarray
77
snATAC-seq
67
WGBS
36
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
363
Transcription
Date released
106
August, 2021
49
April, 2018
47
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
205
tsv
133
fastq
102
bam
102
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
363
Homo sapiens
Biosample type
183
primary cell
180
tissue
Organ
93
heart
80
pancreas
70
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
2
artery
1
liver
1
musculature of body
Project
222
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
211
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
5
audit script error
replication_type!
isogenic
BIOSAMPLE
ASSAY
363 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 12 more…
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
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