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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 95Transcription
Target of assay
  • 3control
Date released
  • 43July, 2018
  • 39April, 2018
  • 3August, 2018
  • 3July, 2019
  • 2December, 2019
  • 1February, 2021
  • 1February, 2023
  • 1June, 2018
  • 1May, 2022
  • 1September, 2018
Available data
  • 91tsv
  • 89bam
  • 89bigWig
  • 84fastq
  • 2csv
Organism
  • 95Homo sapiens
Biosample type
  • 84primary cell
  • 9tissue
  • 2in vitro differentiated cells
Organ
  • 70pancreas
  • 60epithelium
  • 4connective tissue
  • 3brain
  • 1heart
  • 1liver
  • 1musculature of body
Project
  • 95AMP
Genome assembly (visualization)
  • 89GRCh38
  • 89hg19
Lab
  • 95AMP-T2D consortium
Audit category:
  • 6inconsistent ontology term
  • 2audit script error
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

95 results

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Clear Filters
single cell RNA-seq
primary cell
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
pancreatic acinar cell8
tissue
islet of Langerhans6
heart1
liver1
skeletal muscle tissue1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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