Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1286
total RNA-seq
1116
ChIP-seq
336
ATAC-seq
274
single cell RNA-seq
163
DNase-seq
87
RNA microarray
72
snATAC-seq
67
WGBS
15
Hi-C
8
pCHi-C
7
small RNA-seq
5
GRO-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Assay category
274
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
33
May, 2022
17
February, 2021
10
April, 2018
9
April, 2020
5
July, 2018
3
May, 2023
2
June, 2018
1
December, 2019
1
November, 2018
Available data
120
tsv
52
zippedFastqFolder
50
fastq
17
bam
17
bigWig
13
txt
6
csv
Organism
274
Homo sapiens
Biosample type
171
tissue
103
primary cell
Organ
92
heart
64
kidney
10
epithelium
10
pancreas
9
lung
6
blood vessel
6
vasculature
2
artery
Project
133
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
122
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
5
audit script error
3
inconsistent ontology term
BIOSAMPLE
ASSAY
274 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
4
mesenchymal cell
3
pancreatic cell
2
pancreatic polypeptide-secreting cell
2
+ See 6 more…
See all biosamples
Download