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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1779
ChIP-seq
1519
total RNA-seq
526
ATAC-seq
368
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
74
WGBS
54
pCHi-C
23
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
8
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
83
DNA accessibility
16
Transcription
Date released
27
February, 2021
21
May, 2022
16
January, 2021
16
July, 2019
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
16
bam
16
bigWig
16
tsv
Organism
98
Homo sapiens
Biosample type
57
primary cell
42
tissue
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
7
kidney
4
brain
3
adipose tissue
3
connective tissue
3
liver
musculature of body
1
heart
Project
48
HPAP
23
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
17
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
assay_title!
DNAme array
files.file_type!
bed bed3+
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
99 results
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snATAC-seq
small RNA-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
body of pancreas
2
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