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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1799
ChIP-seq
1467
total RNA-seq
455
ATAC-seq
305
single cell RNA-seq
130
DNase-seq
85
RNA microarray
78
snATAC-seq
73
WGBS
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
Transcription
1
DNA sequencing
Date released
17
July, 2019
1
August, 2021
Available data
17
bam
17
bigWig
17
tsv
1
vcf
Organism
18
Homo sapiens
Biosample type
15
tissue
2
primary cell
1
cell line
Organ
4
brain
4
liver
3
adipose tissue
3
connective tissue
2
musculature of body
2
pancreas
1
heart
kidney
Project
18
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
17
AMP-T2D consortium
1
Bing Ren, UCSD
assay_title!
pCHi-C
organ_slims!
kidney
spleen
BIOSAMPLE
ASSAY
18 results
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small RNA-seq
whole genome sequencing assay
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 8 more…
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
cell line
HepG2
1
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