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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1305
total RNA-seq
440
ATAC-seq
275
single cell RNA-seq
208
DNase-seq
48
pCHi-C
36
snATAC-seq
28
WGBS
26
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
36
DNA accessibility
Date released
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
1
bed bed3+
1
txt
Organism
35
Homo sapiens
Biosample type
28
tissue
8
primary cell
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
HPAP
18
T1D
10
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
assay_title!
HiChIP
audit.ERROR.category!
inconsistent ontology term
award.project!
HPAP
BIOSAMPLE
ASSAY
36 results
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snATAC-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
primary cell
peripheral blood mononuclear cell
8
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