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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
MeRIP-seq
3
snDrop-seq
Assay category
1031
Transcription
28
DNA accessibility
Date released
444
February, 2021
143
May, 2020
120
July, 2018
89
August, 2017
56
August, 2021
39
May, 2021
31
July, 2019
27
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
15
February, 2023
10
April, 2020
9
March, 2020
8
January, 2021
1
August, 2022
1
May, 2023
Available data
925
tsv
901
bam
895
bigWig
97
fastq
60
txt
1
bed bed3+
Organism
1058
Homo sapiens
Biosample type
1059
tissue
303
primary cell
136
in vitro differentiated cells
113
cell line
Organ
455
connective tissue
397
adipose tissue
294
pancreas
170
liver
62
bone element
56
kidney
19
eye
17
brain
15
heart
10
lung
7
blood vessel
7
limb
7
vasculature
6
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
1
spinal cord
Project
1032
AMP
17
T1D
10
LungMap
Genome assembly (visualization)
897
hg19
896
GRCh38
Lab
951
AMP-T2D consortium
55
Katalin Susztak, Upenn
22
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
2
audit script error
1
inconsistent ontology term
assay_title!
CRISPR RNA-seq
MeRIP-seq
BIOSAMPLE
ASSAY
1059 results
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total RNA-seq
snATAC-seq
tissue
adipose tissue
382
islet of Langerhans
292
7
liver
167
bone tissue
58
kidney
49
6
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