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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
323
ChIP-seq
165
single cell RNA-seq
138
ATAC-seq
133
total RNA-seq
86
RNA microarray
24
pCHi-C
21
WGBS
17
DNase-seq
17
snATAC-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
133
Transcription
17
DNA accessibility
Date released
56
August, 2021
26
May, 2022
23
February, 2020
15
February, 2023
14
October, 2019
8
January, 2021
4
July, 2018
2
March, 2020
1
August, 2022
1
May, 2021
Available data
59
txt
28
tsv
6
bam
6
fastq
Organism
150
Homo sapiens
Biosample type
151
primary cell
150
tissue
9
cell line
5
in vitro differentiated cells
Organ
55
kidney
31
pancreas
21
liver
19
eye
12
brain
4
bone element
4
skeleton
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
connective tissue
2
epithelium
2
musculature of body
1
nerve
1
spinal cord
Project
133
AMP
17
T1D
Genome assembly (visualization)
hg19
443
GRCh38
Lab
55
Katalin Susztak, Upenn
52
AMP-T2D consortium
22
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
hg19
lab.title!
Xin Sun, UCSD
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
150 results
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total RNA-seq
snATAC-seq
tissue
kidney
49
6
islet of Langerhans
32
7
liver
20
pancreas
1
4
retina
3
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