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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
562
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
238
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
6
Hi-C
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
238
Transcription
83
DNA accessibility
Date released
95
February, 2023
55
August, 2021
47
May, 2022
27
February, 2021
25
February, 2020
16
January, 2021
16
September, 2020
14
October, 2019
10
April, 2020
7
May, 2021
4
July, 2018
2
March, 2020
2
May, 2020
1
August, 2022
Available data
125
fastq
59
txt
29
tsv
21
zippedFastqFolder
6
bam
Organism
320
Homo sapiens
Biosample type
161
tissue
151
primary cell
9
in vitro differentiated cells
Organ
83
pancreas
55
epithelium
55
kidney
21
liver
19
eye
12
brain
10
lung
8
blood
8
bodily fluid
6
connective tissue
4
bone element
4
skeleton
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
musculature of body
1
nerve
1
spinal cord
Project
146
AMP
140
HPAP
25
T1D
10
LungMap
Genome assembly (visualization)
hg19
1277
GRCh38
Lab
140
Klaus Kaestner, Upenn
61
AMP-T2D consortium
55
Katalin Susztak, Upenn
35
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Bing Ren, UCSD
10
Xin Sun, UCSD
Audit category:
28
audit script error
3
inconsistent ontology term
assembly!
hg19
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
321 results
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Clear Filters
total RNA-seq
snATAC-seq
tissue
kidney
49
6
islet of Langerhans
31
7
liver
20
lung
10
pancreas
1
4
+ See 30 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
peripheral blood mononuclear cell
8
+ See 3 more…
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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