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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
Transcription
82
DNA accessibility
Date released
83
February, 2023
65
August, 2021
59
May, 2021
47
May, 2022
45
May, 2020
27
February, 2021
16
January, 2021
16
September, 2020
10
April, 2020
Available data
125
fastq
106
tsv
102
bam
98
bigWig
55
txt
21
zippedFastqFolder
2
bed bed3+
Organism
367
Homo sapiens
Biosample type
246
primary cell
108
tissue
9
cell line
5
in vitro differentiated cells
Organ
76
pancreas
55
kidney
53
epithelium
29
liver
10
lung
8
blood
8
bodily fluid
Project
140
HPAP
119
T1D
99
AMP
10
LungMap
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
140
Klaus Kaestner, Upenn
133
Kyle Gaulton, UCSD
55
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
10
Xin Sun, UCSD
Audit category:
27
audit script error
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
368 results
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total RNA-seq
snATAC-seq
primary cell
monocyte
53
Langerhans cell
48
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 25 more…
tissue
kidney
49
6
liver
20
islet of Langerhans
12
6
lung
10
pancreas
1
4
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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