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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
18
DNA accessibility
Date released
59
May, 2021
45
May, 2020
16
January, 2021
7
February, 2023
6
May, 2022
Available data
102
bam
98
bigWig
96
tsv
6
fastq
6
txt
2
bed bed3+
Organism
133
Homo sapiens
Biosample type
106
primary cell
22
tissue
5
in vitro differentiated cells
Organ
22
pancreas
8
blood
8
bodily fluid
Project
119
T1D
14
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
1182
AMP-T2D consortium
140
Klaus Kaestner, Upenn
133
Kyle Gaulton, UCSD
55
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
10
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
133 results
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total RNA-seq
snATAC-seq
primary cell
monocyte
53
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
B cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
11
6
pancreas
1
4
in vitro differentiated cells
embryonic stem cell
5
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