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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
397
Transcription
11
DNA accessibility
Date released
120
July, 2018
89
August, 2017
44
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
8
January, 2021
6
May, 2022
5
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
August, 2022
1
February, 2020
Available data
330
bam
326
tsv
324
bigWig
178
fastq
6
txt
Organism
408
Homo sapiens
Biosample type
294
tissue
81
primary cell
33
cell line
Organ
474
connective tissue
408
pancreas
adipose tissue
189
liver
131
epithelium
72
heart
66
kidney
62
bone element
61
blood vessel
61
vasculature
56
artery
19
eye
17
brain
14
embryo
10
lung
8
blood
8
bodily fluid
7
limb
7
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
336
AMP
53
HPAP
19
T1D
Genome assembly (visualization)
324
GRCh38
324
hg19
Lab
332
AMP-T2D consortium
53
Klaus Kaestner, Upenn
22
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
1
audit script error
organ_slims!
adipose tissue
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
408 results
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Clear Filters
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
278
7
pancreas
2
4
body of pancreas
3
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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