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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
ChIP-seq
186
ATAC-seq
172
single cell RNA-seq
153
total RNA-seq
87
RNA microarray
52
pCHi-C
35
snATAC-seq
26
WGBS
25
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
35
DNA accessibility
Date released
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Organism
34
Homo sapiens
Biosample type
27
tissue
8
primary cell
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
Project
18
T1D
10
LungMap
7
AMP
Genome assembly (visualization)
hg19
Lab
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
hg19
lab.title!
Klaus Kaestner, Upenn
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
35 results
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snATAC-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
primary cell
peripheral blood mononuclear cell
8