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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1273
total RNA-seq
1014
ChIP-seq
367
ATAC-seq
225
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
56
pCHi-C
45
snATAC-seq
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
45
DNA accessibility
Date released
22
May, 2022
16
January, 2021
6
August, 2021
February, 2023
1
August, 2022
Available data
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
45
Homo sapiens
Biosample type
29
primary cell
16
tissue
Organ
9
pancreas
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
21
HPAP
16
T1D
8
AMP
Genome assembly (visualization)
1
hg19
Lab
21
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
audit.ERROR.category!
inconsistent control
files.file_type!
fastq
lab.title!
Xin Sun, UCSD
month_released!
February, 2023
BIOSAMPLE
ASSAY
45 results
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Clear Filters
snATAC-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
kidney
6
islet of Langerhans
5
pancreas
4
skeletal muscle tissue
1
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