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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1554
ChIP-seq
1154
total RNA-seq
301
ATAC-seq
180
single cell RNA-seq
31
pCHi-C
28
WGBS
28
snATAC-seq
19
Hi-C
18
DNase-seq
16
small RNA-seq
11
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA accessibility
Date released
10
April, 2020
8
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
1
bed bed3+
1
txt
Organism
27
Homo sapiens
Biosample type
primary cell
28
tissue
Organ
11
pancreas
10
lung
6
kidney
1
musculature of body
Project
10
LungMap
10
T1D
8
AMP
Genome assembly (visualization)
1
hg19
Lab
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
month_released!
June, 2019
organ_slims!
ovary
BIOSAMPLE
ASSAY
28 results
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Clear Filters
snATAC-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
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