Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1638
ChIP-seq
1091
total RNA-seq
376
ATAC-seq
204
DNase-seq
204
single cell RNA-seq
87
RNA microarray
54
pCHi-C
25
Hi-C
25
snATAC-seq
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
25
DNA accessibility
Date released
10
April, 2020
8
January, 2021
6
August, 2021
1
May, 2022
Available data
1
bed bed3+
1
txt
Organism
24
Homo sapiens
Biosample type
17
tissue
8
primary cell
Organ
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
HPAP
10
LungMap
8
T1D
7
AMP
Genome assembly (visualization)
1
hg19
Lab
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
1
audit script error
award.project!
HPAP
month_released!
October, 2017
organ_slims!
pancreas
thymus
BIOSAMPLE
ASSAY
25 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
tissue
lung
10
kidney
6
skeletal muscle tissue
1
primary cell
peripheral blood mononuclear cell
8
Download