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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1064
total RNA-seq
848
ChIP-seq
417
ATAC-seq
233
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
39
snATAC-seq
35
pCHi-C
29
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
39
DNA accessibility
Date released
22
May, 2022
10
April, 2020
6
August, 2021
1
August, 2022
Available data
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
38
Homo sapiens
Biosample type
21
primary cell
18
tissue
Organ
10
lung
6
kidney
1
musculature of body
1
pancreas
Project
21
HPAP
T1D
10
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
21
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
award.project!
T1D
biosample_type!
in vitro differentiated cells
files.file_type!
fastq
BIOSAMPLE
ASSAY
39 results
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snATAC-seq
primary cell
Langerhans cell
21
tissue
lung
10
kidney
6
islet of Langerhans
1
skeletal muscle tissue
1
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