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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1818
ChIP-seq
1467
total RNA-seq
456
ATAC-seq
305
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
52
pCHi-C
17
RRBS
17
small RNA-seq
13
Hi-C
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
78
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
77
Homo sapiens
Biosample type
56
primary cell
22
tissue
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
kidney
1
musculature of body
Project
48
HPAP
18
T1D
10
LungMap
2
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
AMP-T2D consortium
Audit category:
29
audit script error
files.file_type!
bedpe bed3+
tagAlign bed3+
organ_slims!
kidney
BIOSAMPLE
ASSAY
78 results
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Clear Filters
snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
pancreas
4
skeletal muscle tissue
1
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