Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1132
total RNA-seq
860
ChIP-seq
379
ATAC-seq
224
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
38
pCHi-C
33
snATAC-seq
32
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
33
DNA accessibility
Date released
22
May, 2022
10
April, 2020
1
August, 2022
Available data
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
32
Homo sapiens
Biosample type
21
primary cell
12
tissue
Organ
10
lung
1
musculature of body
1
pancreas
Project
21
HPAP
10
LungMap
2
AMP
Genome assembly (visualization)
1
hg19
Lab
21
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
files.file_type!
fastq
lab.title!
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
33 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
primary cell
Langerhans cell
21
tissue
lung
10
islet of Langerhans
1
skeletal muscle tissue
1
Download