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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1784
ChIP-seq
1527
total RNA-seq
529
ATAC-seq
369
single cell RNA-seq
211
DNase-seq
86
RNA microarray
75
snATAC-seq
73
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
Assay category
75
DNA accessibility
Date released
27
February, 2021
22
May, 2022
9
April, 2020
8
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
75
Homo sapiens
Biosample type
48
primary cell
27
tissue
Organ
11
pancreas
9
lung
8
blood
bodily fluid
6
kidney
1
musculature of body
Project
48
HPAP
10
T1D
9
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
10
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
29
audit script error
files.file_type!
vcf
organ_slims!
bodily fluid
spleen
BIOSAMPLE
ASSAY
75 results
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Clear Filters
snATAC-seq
primary cell
Langerhans cell
48
tissue
lung
9
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
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