Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1695
ChIP-seq
1330
total RNA-seq
422
ATAC-seq
369
single cell RNA-seq
176
DNase-seq
87
RNA microarray
76
snATAC-seq
74
WGBS
56
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
76
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
75
Homo sapiens
Biosample type
48
primary cell
28
tissue
Organ
11
pancreas
10
lung
8
blood
bodily fluid
6
kidney
1
musculature of body
Project
48
HPAP
10
LungMap
10
T1D
8
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
29
audit script error
month_released!
May, 2020
organ_slims!
bodily fluid
limb
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
primary cell
Langerhans cell
48
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
Download