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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1653ChIP-seq
  • 1130total RNA-seq
  • 379ATAC-seq
  • 289single cell RNA-seq
  • 204DNase-seq
  • 87RNA microarray
  • 74snATAC-seq
  • 56pCHi-C
  • 25Hi-C
  • 24WGBS
  • 19RRBS
  • 16small RNA-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 74DNA accessibility
Date released
  • 27February, 2021
  • 22May, 2022
  • 10April, 2020
  • 8January, 2021
  • 6August, 2021
  • 1July, 2025
Available data
  • 27fastq
  • 21zippedFastqFolder
  • 2bed bed3+
  • 1tbi
  • 1tsv
  • 1txt
Organism
  • 72Homo sapiens
Biosample type
  • 56primary cell
  • 18tissue
Organ
  • pancreas
  • 10lung
  • 8blood
  • 8bodily fluid
  • 6kidney
  • 2musculature of body
Project
  • 48HPAP
  • 10LungMap
  • 8AMP
  • 8T1D
Genome assembly (visualization)
  • 1GRCh38
  • 1hg19
Lab
  • 48Klaus Kaestner, Upenn
  • 10Xin Sun, UCSD
  • 8Kyle Gaulton, UCSD
  • 6Katalin Susztak, Upenn
  • 1AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 28audit script error
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

74 results

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Clear Filters
snATAC-seq
primary cell
Langerhans cell48
peripheral blood mononuclear cell8
tissue
lung10
kidney6
skeletal muscle tissue2
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