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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1690ChIP-seq
  • 1337total RNA-seq
  • 426ATAC-seq
  • 280single cell RNA-seq
  • 185DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 79DNA accessibility
Date released
  • 27February, 2021
  • 21May, 2022
  • 14January, 2021
  • 10April, 2020
  • 6August, 2021
  • 1August, 2022
Available data
  • 27fastq
  • 21zippedFastqFolder
Organism
  • 78Homo sapiens
Biosample type
  • 54primary cell
  • 25tissue
Organ
  • 10lung
  • 9pancreas
  • 6blood
  • 6bodily fluid
  • 6kidney
Project
  • 48HPAP
  • 14T1D
  • 10LungMap
  • 7AMP
Lab
  • 48Klaus Kaestner, Upenn
  • 14Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 6Katalin Susztak, Upenn
  • 1AMP-T2D consortium
Audit category:
  • 28audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

79 results

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Clear Filters
snATAC-seq
primary cell
Langerhans cell48
peripheral blood mononuclear cell6
tissue
lung10
kidney6
islet of Langerhans5
pancreas4
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