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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1476
total RNA-seq
1297
ChIP-seq
441
ATAC-seq
363
single cell RNA-seq
190
DNase-seq
87
RNA microarray
77
snATAC-seq
67
WGBS
36
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
77
DNA accessibility
Date released
27
February, 2021
22
May, 2022
13
January, 2021
10
April, 2020
2
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
76
Homo sapiens
Biosample type
56
primary cell
21
tissue
Organ
10
lung
8
blood
8
bodily fluid
8
pancreas
2
kidney
1
musculature of body
Project
48
HPAP
15
T1D
10
LungMap
4
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
15
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
AMP-T2D consortium
2
Katalin Susztak, Upenn
Audit category:
29
audit script error
replication_type!
isogenic
BIOSAMPLE
ASSAY
77 results
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snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
6
kidney
2
pancreas
2
skeletal muscle tissue
1
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