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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • 1116ChIP-seq
  • 336ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 87RNA microarray
  • 73snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 73DNA accessibility
Date released
  • 27February, 2021
  • 21May, 2022
  • 11January, 2021
  • 10April, 2020
  • 2August, 2021
  • 1August, 2022
  • 1July, 2025
Available data
  • 27fastq
  • 21zippedFastqFolder
  • 1bed bed3+
  • 1tbi
  • 1tsv
Organism
  • 71Homo sapiens
Biosample type
  • 54primary cell
  • 19tissue
Organ
  • 10lung
  • 6blood
  • 6bodily fluid
  • 6pancreas
  • 2kidney
  • 1musculature of body
Project
  • 48HPAP
  • 11T1D
  • 10LungMap
  • 4AMP
Genome assembly (visualization)
  • 1GRCh38
Lab
  • 48Klaus Kaestner, Upenn
  • 11Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 2Katalin Susztak, Upenn
  • 1AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 28audit script error
BIOSAMPLE
ASSAY

73 results

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Clear Filters
snATAC-seq
primary cell
Langerhans cell48
peripheral blood mononuclear cell6
tissue
lung10
islet of Langerhans4
kidney2
pancreas2
skeletal muscle tissue1
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