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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1556
ChIP-seq
1281
total RNA-seq
460
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
35
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1281
Transcription
Date released
526
February, 2021
145
May, 2020
120
July, 2018
89
August, 2017
84
February, 2023
67
August, 2021
44
July, 2019
44
May, 2021
28
October, 2019
26
September, 2018
25
February, 2020
20
May, 2022
20
November, 2019
16
September, 2020
13
March, 2020
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1095
tsv
1053
bam
1053
bigWig
216
fastq
53
txt
Organism
1284
Homo sapiens
Biosample type
1022
tissue
149
primary cell
in vitro differentiated cells
113
cell line
Organ
465
connective tissue
398
adipose tissue
385
pancreas
189
liver
129
epithelium
71
heart
63
kidney
62
bone element
61
blood vessel
61
vasculature
56
artery
19
eye
17
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1188
AMP
92
HPAP
4
T1D
Genome assembly (visualization)
1054
GRCh38
1054
hg19
Lab
1113
AMP-T2D consortium
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
biosample_type!
in vitro differentiated cells
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
1284 results
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total RNA-seq
snDrop-seq
tissue
adipose tissue
382
islet of Langerhans
281
liver
167
bone tissue
58
kidney
49
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primary cell
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
osteoblast
5
+ See 21 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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