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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
829
total RNA-seq
ATAC-seq
178
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
829
Transcription
Date released
444
February, 2021
May, 2020
120
July, 2018
89
August, 2017
39
May, 2021
31
July, 2019
25
February, 2020
22
October, 2019
20
May, 2022
19
November, 2019
9
February, 2023
9
March, 2020
1
August, 2021
1
May, 2023
Available data
782
tsv
758
bam
752
bigWig
97
fastq
txt
Organism
829
Homo sapiens
Biosample type
829
tissue
200
primary cell
136
in vitro differentiated cells
113
cell line
Organ
455
connective tissue
397
adipose tissue
277
pancreas
58
bone element
27
liver
19
eye
17
brain
15
heart
7
blood vessel
7
limb
7
vasculature
5
musculature of body
5
nerve
2
artery
2
epithelium
1
kidney
1
spinal cord
Project
822
AMP
7
T1D
Genome assembly (visualization)
753
GRCh38
753
hg19
Lab
802
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
txt
month_released!
May, 2020
BIOSAMPLE
ASSAY
829 results
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total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
286
bone tissue
58
liver
24
subcutaneous adipose tissue
7
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