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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
95
total RNA-seq
74
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
95
Transcription
Date released
545
February, 2021
190
May, 2020
182
May, 2021
120
July, 2018
93
February, 2023
89
August, 2017
74
August, 2021
44
July, 2019
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
15
February, 2018
15
March, 2020
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
78
fastq
6
tsv
4
txt
2
bam
2
bigWig
Organism
95
Homo sapiens
Biosample type
78
primary cell
13
tissue
4
in vitro differentiated cells
Organ
44
pancreas
41
epithelium
4
bone element
4
connective tissue
4
eye
4
skeleton
Project
76
HPAP
14
AMP
5
T1D
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
76
Klaus Kaestner, Upenn
14
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
95 results
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total RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
pancreatic acinar cell
2
tissue
islet of Langerhans
5
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
ilium
1
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in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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