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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
97
total RNA-seq
84
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
Hi-C
6
RRBS
1
FAIRE-seq
1
RNA microarray
Assay category
97
Transcription
Date released
39
February, 2023
26
September, 2018
16
September, 2020
5
December, 2019
5
July, 2019
2
May, 2021
2
October, 2018
2
October, 2019
Available data
81
fastq
44
tsv
42
bam
42
bigWig
Organism
97
Homo sapiens
Biosample type
93
primary cell
cell line
2
in vitro differentiated cells
2
tissue
Organ
474
connective tissue
398
adipose tissue
364
pancreas
175
liver
97
epithelium
62
bone element
56
kidney
20
heart
19
eye
17
brain
9
blood vessel
9
vasculature
7
limb
6
embryo
6
musculature of body
5
nerve
4
artery
4
skeleton
1
pericardium
1
spinal cord
Project
53
HPAP
44
AMP
Genome assembly (visualization)
42
GRCh38
42
hg19
Lab
53
Klaus Kaestner, Upenn
44
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
Hi-C
biosample_type!
cell line
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 7 more…
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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