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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
365
ATAC-seq
261
single cell RNA-seq
240
total RNA-seq
RNA microarray
84
snATAC-seq
58
WGBS
52
pCHi-C
25
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
240
Transcription
Date released
89
February, 2023
59
August, 2021
26
May, 2022
25
February, 2020
16
September, 2020
14
October, 2019
4
July, 2018
2
March, 2020
2
May, 2020
2
May, 2021
1
May, 2023
Available data
1188
tsv
1155
bam
bigWig
222
fastq
59
txt
2
bed bed3+
Organism
240
Homo sapiens
Biosample type
136
tissue
95
primary cell
9
cell line
in vitro differentiated cells
Organ
73
pancreas
55
epithelium
49
kidney
30
liver
19
eye
12
brain
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
nerve
1
spinal cord
Project
141
AMP
92
HPAP
7
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
92
Klaus Kaestner, Upenn
57
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
RNA microarray
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
BIOSAMPLE
ASSAY
240 results
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Clear Filters
total RNA-seq
tissue
kidney
49
islet of Langerhans
32
liver
20
retina
3
pigmented layer of retina
2
+ See 30 more…
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
+ See 1 more…
cell line
HepG2
9
See all biosamples
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