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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
125
total RNA-seq
87
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
6
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
125
Transcription
Date released
39
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
May, 2021
5
December, 2019
5
July, 2019
3
October, 2019
2
March, 2020
2
October, 2018
1
November, 2019
Available data
81
fastq
72
tsv
70
bam
70
bigWig
Organism
125
Homo sapiens
Biosample type
93
primary cell
30
cell line
2
tissue
Organ
473
connective tissue
398
adipose tissue
356
pancreas
189
liver
125
epithelium
69
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
12
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
70
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
70
GRCh38
70
hg19
Lab
72
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
29
inconsistent ontology term
assay_title!
STARR-seq
files.file_type!
hdf5
month_released!
May, 2021
BIOSAMPLE
ASSAY
125 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 7 more…
cell line
EndoC_BH1
29
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
2
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