Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
218
ChIP-seq
152
ATAC-seq
51
WGBS
41
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
398
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
2
February, 2020
2
July, 2019
2
October, 2018
1
August, 2021
Available data
330
bam
327
tsv
324
bigWig
178
fastq
6
txt
Organism
398
Homo sapiens
Biosample type
284
tissue
81
primary cell
33
cell line
Organ
474
connective tissue
398
adipose tissue
397
pancreas
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
336
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
324
GRCh38
324
hg19
Lab
332
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
assay_title!
STARR-seq
month_released!
April, 2018
BIOSAMPLE
ASSAY
398 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
islet of Langerhans
278
body of pancreas
3
pancreas
2
C1 segment of cervical spinal cord
1
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
Download