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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1186
ChIP-seq
460
ATAC-seq
367
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
WGBS
42
pCHi-C
21
RRBS
18
small RNA-seq
9
Hi-C
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1278
Transcription
Date released
445
February, 2021
190
May, 2020
120
July, 2018
94
May, 2021
89
August, 2017
89
February, 2023
50
August, 2021
44
July, 2019
26
May, 2022
26
September, 2018
25
February, 2020
24
October, 2019
19
November, 2019
16
September, 2020
9
March, 2020
5
December, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1075
tsv
1051
bam
1047
bigWig
217
fastq
59
txt
2
bed bed3+
Organism
1278
Homo sapiens
Biosample type
1031
tissue
247
primary cell
136
in vitro differentiated cells
113
cell line
Organ
465
connective tissue
398
adipose tissue
364
pancreas
175
liver
95
epithelium
62
bone element
56
kidney
19
eye
19
heart
17
brain
9
blood vessel
9
vasculature
7
limb
6
musculature of body
5
nerve
4
artery
4
skeleton
1
pericardium
1
spinal cord
Project
1083
AMP
103
T1D
92
HPAP
Genome assembly (visualization)
1048
hg19
1046
GRCh38
Lab
1006
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
assay_title!
WGBS
files.file_type!
hic
BIOSAMPLE
ASSAY
1278 results
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Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
liver
167
bone tissue
58
kidney
49
+ See 47 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 45 more…
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