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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
single cell RNA-seq
80
total RNA-seq
58
snATAC-seq
47
WGBS
46
ATAC-seq
4
ChIP-seq
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
80
Transcription
Date released
76
February, 2023
September, 2020
4
March, 2020
Available data
76
fastq
2
bam
2
bigWig
2
tsv
Organism
80
Homo sapiens
Biosample type
76
primary cell
2
cell line
2
tissue
Organ
41
pancreas
39
epithelium
Project
AMP
76
HPAP
4
T1D
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
Kyle Gaulton, UCSD
76
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
pCHi-C
award.project!
AMP
lab.title!
Kyle Gaulton, UCSD
month_released!
September, 2020
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
EndoC_BH1
2
tissue
islet of Langerhans
2
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